RnoEX6033974 @ rn6
Exon Skipping
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140905845-140908645:+
Coord C1 exon
chr7:140905845-140906062
Coord A exon
chr7:140907318-140907649
Coord C2 exon
chr7:140908539-140908645
Length
332 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCCCTCTGTCCCCAGGTG
3' ss Score
14.36
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGAAGGGTGACCTGATCGGCTGTGAGCTGCCCCAGCGAGAGCAAGTAGTGAAGGCCAATGCCGACGTAAAGGGGCTGACATACTGCGTCCTACAGTGCCTGCAGCTGGCTGGGCTGCACGAGAGCCTCGCACTGTACCCTGAGTTTGCCCCACGCTTTAGCCGTGGCCTCCGAGGGGAGCTCAGCTACAACCTGGGAGCTGGAGGAGTGTCTGCAGAG
Seq A exon
GTGGATACCAGCTCACTGAGTGGTGACAACACCCTCATGTCCACACTGGAGGAGAAGGAGACAGACGGGGAGCAAGGACACACGATCTCACCAGCCCCAGCAGATGAGCCCTCCAGCCCCCTGCTGTCACCTGGCTGTACCTCCTCCTCCTCAGCGGCCAAACTACTCTCCCCACGTCGAACTGCACCCCGGCCGAGGCTGGGTGGCAGAGGGCGGCCAAGTAGGGCAGGGGTTTTGAAGCCTGAGGCTGGTCCTTCTGCTCATCCACGGACACTTGATGGGTTGCAGCTGCCCCCCATGCCATGGAATGTACCTCCAGACCTGAGCCCCAG
Seq C2 exon
GGTCGTAGATGGCATTGAGGATGGCTGCGGCTCTGACCAGCACAAGTTCTCTTTCCGGGTGGGTCAGTCTGGCCCAGAATGTAGCAGCAGCCCCTCCCCAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315-'20-16,'20-15,21-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.982 C2=0.946
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=64.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTGATCGGCTGTGAG
R:
CTGTTCCTGGGGAGGGGC
Band lengths:
319-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]