DreEX6036556 @ danRer10
Exon Skipping
Gene
ENSDARG00000069560 | kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-23]
Coordinates
chr9:28101555-28109967:-
Coord C1 exon
chr9:28109753-28109967
Coord A exon
chr9:28102007-28102263
Coord C2 exon
chr9:28101555-28101655
Length
257 bp
Sequences
Splice sites
3' ss Seq
ACTCACTCTTTCTCTCTCAGCTG
3' ss Score
9.19
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GAAAAGGGGATCTGATTGGATCGGATTCGCTAACAAAAGAGCAGGTGATCAAGACTAACGCAAACGTGAAAGCACTGACGTATTGTGACCTGCAGTACATCAGCCTGAAAGGACTGCGAGAAGTGCTGCGCCTCTATCCTGAATACGCCCAGAAATTTGTCAGTGAAATTCAGCATGATCTCACCTATAACCTGCGGGAGGGCAGCGGAGCTGAT
Seq A exon
CTGGACTGGGAAAGTAATGGTGGTCTGGTGAAGAAACTGCCTGCTATCCGTGAGGATGAGGAGAATGATGAAGAGCAGAACTCTGTGTCAAGGGCCCCACGTTCACCTCTTCGTCTGACCAGGGCCCTCAGCTCCCCCTTGCGATCACCCCTCCTTCCCCCCCGACCCTTCCGTGCTCCATCTGAGAGCATGCGACCCGCCACCCTCCAGATCCCTGTGGTCAGTTTCAGCAGCGCCCCTCCAGAACTCAGCCCCAG
Seq C2 exon
GTTCGTGGACGGCATAGAAACAGAAAGCAATTCCAGCTCAACACAAAGGTTTGAGTTCGGTCCCAGCCTACCTCAGAGTGGCCCTCCATCCCCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069560-'11-12,'11-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.733 C2=1.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGGATCTGATTGGATCGG
R:
CACTCTGAGGTAGGCTGGGAC
Band lengths:
292-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]