BtaEX0018911 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93669904-93672317:-
Coord C1 exon
chr4:93672260-93672317
Coord A exon
chr4:93671800-93671893
Coord C2 exon
chr4:93669904-93670092
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTCACCTGCTCCCAGGAT
3' ss Score
8.5
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TCTGCGTGCTTGATGAAGAGGAGTTTGCTGAGGGTGTCCAGTGGGAGCCTGATGGCCA
Seq A exon
GATGGGACCGTGACGTGCTCCTTGGTCAACTGCCCTCCCACAACCTGTGCCAGGCCTCAGAGGGGACCCAGCCAATGCTGCCCCAGGTGCCCAG
Seq C2 exon
CTGCCCCCTCGGGCTGCCCCCGGCCAGGGGGCTTGGTCCCTGCCCACCACCAGGAGTACTTCTCCCCGCCCGACGACCCCTGCCGCCGCTGCCTCTGCCTGGACGGCTCGGTGTCCTGCCGGAGACTGCCCTGCCCTCCCGTGCCCTGCACCCACCCGCACCAGGGGCCCTGCTGCCCCTCCTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449_MULTIEX1-2/25=C1-6
Average complexity
C3
Mappability confidence:
97%=100=97%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(87.7=96.2)
A:
PF0009313=VWC=PD(51.8=90.6)
C2:
PF0009313=VWC=WD(100=79.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGTTTGCTGAGGGTGT
R:
AGTCTCCGGCAGGACACC
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development