RnoEX0046275 @ rn6
Exon Skipping
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56775285-56776289:-
Coord C1 exon
chr4:56776183-56776289
Coord A exon
chr4:56776015-56776108
Coord C2 exon
chr4:56775285-56775458
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTTCCCTGCTCCCAGGAT
3' ss Score
7.8
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTGCCTGCTGCCCCAGCTGTGAGAGCTGCACCTACCACGGCCTAGTGTATTCTAATGGGCAGAACTTCACAGATGTGGACAGCCCTTGTCAGACCTGCTACTGTGAG
Seq A exon
GATGGGACTGTGAGGTGTTCGGTGATCAACTGTCCTTCCCTGACCTGTGCCAAGCCCCAGAATGGACCAGGCCAGTGCTGCCCCAAGTGCCCAG
Seq C2 exon
ACTGCATCCTGGAGGCACAGATGTTTGTAGATGGGGAGCGCTTTCCTCATCCAAGAGACCCCTGCCAGGAGTGCCTGTGTCAGGAAGGCCAGACTCACTGCCAGCTCCGAGCCTGCCACAGCGCCCCCTGTGGTCACCCTCTGCCAAGCACCTGCTGCAGGAATGACTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(10.5=16.7),PF0009313=VWC=PU(45.6=72.2)
A:
PF0009313=VWC=PD(50.9=90.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTACCACGGCCTAGTGTA
R:
CAGTGAGTCTGGCCTTCCTGA
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]