MmuEX6003372 @ mm9
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29446802-29447828:-
Coord C1 exon
chr6:29447722-29447828
Coord A exon
chr6:29447553-29447646
Coord C2 exon
chr6:29446802-29446975
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTTCCCTGCTTCCAGGAT
3' ss Score
8.7
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTGCCTGCTGTCCCAGCTGTGATAGCTGCACCTACCACAGCCTGGTGTATGCTAATGGGCAGAACTTCACAGATGTGGACAGCCCTTGTCAGACCTGCTACTGCGAG
Seq A exon
GATGGGACTGTGAGGTGTTCATTGATCAACTGTCCTTTCACAACCTGTGCCAAGCCCCAGAATGGACCAGGCCAGTGCTGCCCTAAGTGCCCAG
Seq C2 exon
ACTGCATCTTGGAGGCACAGGTGTTTGTAGATGGGGAGCGCTTCCCTCATCCAAGAGACCCCTGCCAGGAGTGCTGGTGTCAGGAAGGCCAAGCTCACTGCCAGCTCCGTGCCTGCCCCAGCGCCCCCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(10.5=16.7),PF0009313=VWC=PU(45.6=72.2)
A:
PF0009313=VWC=PD(50.9=90.6)
C2:
PF0009313=VWC=WD(100=94.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTCAGACCTGCTACTGCG
R:
CTGGCAGAGGGTGAACACAG
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: