HsaEX7004429 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128891646-128892794:-
Coord C1 exon
chr7:128892688-128892794
Coord A exon
chr7:128892514-128892607
Coord C2 exon
chr7:128891646-128891819
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTGCTCTCTCGCAGGAT
3' ss Score
11.34
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGCCTGCTGCCCCAGCTGTGACAGCTGCACCTACCACAGCCAAGTGTATGCCAATGGGCAGAACTTCACGGATGCAGACAGCCCTTGCCATGCCTGCCACTGTCAG
Seq A exon
GATGGAACTGTGACATGCTCCTTGGTTGACTGCCCTCCCACGACCTGTGCCAGGCCCCAGAGTGGACCAGGCCAGTGTTGCCCCAGGTGCCCAG
Seq C2 exon
ACTGCATCCTGGAGGAAGAGGTGTTTGTGGACGGCGAGAGCTTCTCCCACCCCCGAGACCCCTGCCAGGAGTGCCGATGCCAGGAAGGCCATGCCCACTGCCAGCCTCGCCCCTGCCCCAGGGCCCCCTGTGCCCACCCGCTGCCTGGGACCTGCTGCCCGAACGACTGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(10.5=16.7),PF0009313=VWC=PU(45.6=72.2)
A:
PF0009313=VWC=PD(50.9=90.6)
C2:
PF0009313=VWC=WD(100=94.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCTACCACAGCCAAG
R:
CTTCCTGGCATCGGCACTC
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains