BtaEX0018977 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002328 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr17:56008768-56010866:+
Coord C1 exon
chr17:56008768-56009028
Coord A exon
chr17:56010013-56010051
Coord C2 exon
chr17:56010187-56010866
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTCCCATGACAGCTA
3' ss Score
9.61
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
CAAAAGCGTGGCCCTGGCTTTAAGTACGCCTCCAACCTGCCTGGCTCCCTGCTCAAGGAGCAGAAGATGAACCGGGACAACAAGGAAGGGCAGGAGCCTGCCAAGCGGAGGAGTGAGTGTGAGGAGGCGCCCCGGCGCAGGTCCGACGAGCACCCCAAGAAGGTGCCCCCCGACGGCATCCTGCGCCGAAAGTCGGACGACGTGCACCTGAGGCGGAAGCGGAAATACGAGAAGCCCCAGGAGCTGAGTGGACGCAAGCGA
Seq A exon
CTAAAACCTGGCAAAGAAGATAAGCTTTTCAGGAAAAAG
Seq C2 exon
CGACGGTCCTGGAAGAACGCCGAGGACCGGATAACTCTAGCCAACAAGCCTCTCCGGCGGTTCAAGCAGGAACCAGAGGACGACCTACCCGAGGCGCCCCCCAAGACCAGGGAGAGCGACCACTCGCGCTCCAGCTCCCCTACTGCCGGGCCAAGCACAGAGGGCGCGGAGGGGCCCGAGGAGAAGAAGAAGGTGAAGATGCGCCGGAAGCGGCGGCTCCCCAACAAGGAGCTGAGCAAGGAGCTGAGCAAGGAGCTGAACCAGGAGATCCAGAAGACGGAGAGCAGCCTGGCCCAGGAGAATCACCAGCCCATCAAGTCGGAGCCTGAGAGCGAGAACGAGGAGCCCAAGCGGCCCCTGGGCCTCTGCGAGCGCCCCCACCGCTTCAGCAAGGGGCTCAACGGCACCCCCCGGGAGCTGCGGCACCAGCTGGGGCCCGGCCTGCGCAGCCCGCCCCGAGTCATCTCCCGGCCCCCTCCCTCCGTGTCCCCGCCCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002328_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.828
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064628=F-box=PU(77.6=19.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATACGAGAAGCCCCAGG
R:
TAGGTCGTCCTCTGGTTCCTG
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development