RnoEX0046420 @ rn6
Exon Skipping
Gene
ENSRNOG00000025702 | Kdm2b
Description
lysine demethylase 2B [Source:RGD Symbol;Acc:1310217]
Coordinates
chr12:39150164-39151734:+
Coord C1 exon
chr12:39150164-39150277
Coord A exon
chr12:39150829-39150867
Coord C2 exon
chr12:39151055-39151734
Length
39 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTCTTCCTATGACAGCTA
3' ss Score
8.68
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GCCTCGACGCTTCAAACGTCCCCCGGTTCCTCCTCTCACCTCTCGCCGAGGCCCCCTCTAGGCAGCAGTCTCAGCCCTTGGTGGAGATCCAGTCTCACTTACTTCCAGCAGCAG
Seq A exon
CTAAAACCTGGCAAAGAAGATAAGCTTCTCAGGAAAAAG
Seq C2 exon
CGGCGGTCCTGGAAGAACGCTGAGGATCGGCTGTCACTGGCCAACAAGCCCCTTCGGCGCTTCAAGCAGGAGCCAGAGGACGACCTGCCTGAGGCACCTCCTAAGACCCGGGAGAGTGATCAGTCACGGTCCAGCTCGCCCACAGCTGGGCCCAGCACTGAGGGGGCCGAGGGCCCAGAAGAGAAGAGGAAGGTGAAGATGCGCCGGAAACGGCGGCTTCCCAACAAGGAGTTGAGCAAAGAGCTAAGCAAGGAGCTCAACCACGAGATCCAAAAGACAGAGAGCACCTTAGCCCACGAGAACCACCAGCCTATCAAGTCAGAGCCCGAGAGTGAAAACGAGGAGCCAAAGAGGCCCTTAAGCCACTGCGAGCGCCCGCACCGCTTCAGCAAAGGGCTCAACGGCACTCCTCGGGAGCTGCGGCACTCACTGGGACCTGGGCTTCGCAGCCCACCTCGTGTCATCTCCCGGCCCCCGCCCTCTACATCCCCACCCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025702-'31-23,'31-22,32-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=1.000 C2=0.837
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064628=F-box=PU(77.6=19.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCTCCTCTCACCTCTCG
R:
ATCCTCAGCGTTCTTCCAGGA
Band lengths:
117-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]