GgaEX0027509 @ galGal3
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
NA
Coordinates
chr15:5526650-5530202:-
Coord C1 exon
chr15:5529942-5530202
Coord A exon
chr15:5528913-5528933
Coord C2 exon
chr15:5526650-5527323
Length
21 bp
Sequences
Splice sites
3' ss Seq
ACAGCTAAAACTTGGAAAAGAAG
3' ss Score
-6.65
5' ss Seq
AAGGTTATT
5' ss Score
4.15
Exon sequences
Seq C1 exon
CAAAAGCGCGGACCAGGATTCAAATACGCATCAAATCTCCCAGGCTCATTGCTGAAGGAACAGAAAATGAACAGAGACAATAAGGAAGTAACAGATGCTGCAAAACGGAAAGGGGACTGTGAAGAAACTCCCAGGCGGAAATCTGAGGAACATTCCAAAAAGCCTCAAGTTGACTCAATTCTGAGGAGAAAGTCAGACGAAGTACATCTGCGGAGGAAAAGGAAATTTGAGAAACCCCAGGAACCCTCTATGAGAAAACGG
Seq A exon
AAGAAACTCTTCAGGAAGAAG
Seq C2 exon
CGGCGATCGTGGAAGGCTTCGGATGAGCGGACCGCCCTGCTCAAACCCCTGCGGCGCCTCAAACAGGAGCCGGAGGACGAGCTGCCGGAAGCACCTCCCCGGTCCAAGGACAGCGACCAGTCGCGATCCAGCTCGCCCACCGCGGGTCCCAGCACAGAGGGGGCCGAGCCCAGGGACAAGAAGAAGTTCAAGATGAGGCGGAAAAGGCGGCTTCCCAATAAGGAACTGAGCAAGGAGCTCAGCAAGGAGCTCAACCAAGAGATCCAAAAAACCGAGAATAGCCTTGCCAATGAGAATCACCAACCCATCAAATCTGAACCCGAGAGCGAAAACGAGGAACCCAAGCGCGCCTTGAACAACAGCGAGAGACTCCATAGGTTCAGCAAAGGGTTGAACGGGACTCCCCGGGAGCTGAGGCACCCGCTCATCCCCAGCCTGCGGAGCACGCCGCGGGGCATCGCCCGGCCCCCGCCCTCGCTCTCCCCTCCCAAATGCATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225_MULTIEX3-6/6=5-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=1.000 C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064628=F-box=PU(77.6=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAAACCCCAGGAACCCT
R:
TCCTCCGGCTCCTGTTTGAG
Band lengths:
112-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]