BtaEX0019224 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34350319-34387463:-
Coord C1 exon
chr3:34387363-34387463
Coord A exon
chr3:34352983-34353103
Coord C2 exon
chr3:34350319-34350511
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGCCCTTCTCTCCCCTGCAGTCT
3' ss Score
11.76
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
Exon sequences
Seq C1 exon
CTGAGCCGCGCACATTCCGGCTTCTGCGGCTGCTGCTCTGGGTTGGGACCGCCTTCCAGGTGACTCAGGGAGCGGGACTGGAGCTTCACGCCTGCAAAGAG
Seq A exon
TCTGAGTACCACTATGAGTACACCGCGTGTGACAGCACAGGTTCCAGGTGGAGGGTCGCCGTGCCGCACACCCCGGGCCTGTGTACCAGCCTCCCCGACCCCGTCAAGGGCACCGAGTGCT
Seq C2 exon
CCTTCTCTTGCAAAGCTGGGGAGTTTCTGGACATGAAGGACCAGTCGTGTAAGCCGTGTGCTGAGGGTCGCTACTCCCTTGGCACAGGCATCCGGTTCGATGAGTGGGATGAACTGCCCCATGGCTTTGCCAGCCTCTCAACCAACATGGAGATTGAGGACAGCACCTTGGAGTCCACCGAAAACTGTACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCAGGTGACTCAGGGAG
R:
AAGTACAGTTTTCGGTGGACTCC
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development