RnoEX0001095 @ rn6
Exon Skipping
Gene
ENSRNOG00000020272 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr2:211279967-211322719:-
Coord C1 exon
chr2:211322567-211322719
Coord A exon
chr2:211283577-211283697
Coord C2 exon
chr2:211279967-211280159
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTCTTTCCCTTGCAGTCA
3' ss Score
11.24
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
Exon sequences
Seq C1 exon
ATGGCTGAGCCTGGTCACAACCCCCAACCTTCTGCCAGAGAAGGCGGAAGAACTGAAAGGCGCACATCCCGGCTTCTGTGGCTGTTGCTTTGGGCTGGGACCACCTTCCAGGTGACCCTGGGAACCGGACCCGAGCTTCACGCCTGCAAAGAG
Seq A exon
TCAGAGTACCATTTTGAATACACAGCGTGTGACAGCACAGGTTCCAGGTGGAGGGTCGCCGTGCCACACAGCCCGGGCTTGTGCACCAGCCTCCCAGACCCCGTCAAGGGCACCGAGTGCT
Seq C2 exon
CTTTCTCTTGCAATGCCGGGGAATTTCTGGACATGAAGGACCAGTCCTGCAAGCCGTGTGCGGAGGGCCGCTACTCCCTCGGCACTGGCATCCGATTTGACGAGTGGGATGAGCTGCCTCACGGCTTTGCCAGCCTCTCGGCCAACTTGGAAGTCGATGACAGCATCTCAGAGTCCACCGAGAACTGCACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020272_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAACCCCCAACCTTCTG
R:
TCGTCAAATCGGATGCCAGTG
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]