MmuEX0001951 @ mm10
Exon Skipping
Gene
ENSMUSG00000040412 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr3:108488830-108536536:-
Coord C1 exon
chr3:108536296-108536536
Coord A exon
chr3:108491999-108492119
Coord C2 exon
chr3:108488830-108489022
Length
121 bp
Sequences
Splice sites
3' ss Seq
CACTGTTCTCTCCCTTGCAGTCA
3' ss Score
11.02
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
Exon sequences
Seq C1 exon
TTTTTTTTTTTTTTTTTTTCCTCCTCTGCCAGCATAAGCAGCCACCGCAGCACCTGAGCCGCTACTGCCGCTGGCTCAGGACAGCGCTATGGCAGAGCCTGGTCACAACCCCCATCCTTCTGCCAGAGACGGAGGAAAAACTGAAAGGCGCACACCCCGGCTTCTGTGGCTGTTGCTTTGGGCTGGGACCACCTTCCAGGTGACCCTGGGAACCGGACCCGAGCTTCACGCCTGCAAAGAG
Seq A exon
TCAGAGTACCATTTTGAGTACACAGCGTGCGACAGCACAGGTTCCAGGTGGAGGGTCGCCGTGCCACACAGCCCGGGCTTGTGCACCAGCCTCCCAGACCCCGTCAAGGGCACCGAGTGCT
Seq C2 exon
CCTTCTCTTGCAATGCCGGGGAATTTCTGGATATGAAGGACCAGTCCTGCAAGCCCTGCGCGGAGGGCCGCTACTCCCTCGGCACTGGCATCCGATTTGATGAGTGGGATGAGCTACCTCACGGCTTTGCCAGCCTCTCGGCCAACTTGGAGGTCGATGACAGCATCTCGGAGTCCACTGAGAACTGCACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040412_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.384 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCAGAGACGGAGGAAAA
R:
CGTGAGGTAGCTCATCCCACT
Band lengths:
246-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types