HsaEX0034016 @ hg38
Exon Skipping
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr1:109114001-109164691:+
Coord C1 exon
chr1:109114001-109114336
Coord A exon
chr1:109161894-109162014
Coord C2 exon
chr1:109164499-109164691
Length
121 bp
Sequences
Splice sites
3' ss Seq
CACTGTTCTCTCCCCTGCAGTCT
3' ss Score
10.49
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
Exon sequences
Seq C1 exon
AGAGGACAGAGGGAGGAGGAAGGATGGGCGGTGTTGGCGTAGCCGCAGGGAGGTGACTGAAGCGAGCCTGGCCTCTTGCATCCTCCGCCTGTGTACCTCCCTCCCCTTTTTTTCCGCCTTCTGCCAGCAGAAGCAGCAGCCGCAGCACCTGAGCCGCTACTGCCGCTCACTCAGGACAACGCTATGGCTGAGCCTGGGCACAGCCACCATCTCTCCGCCAGAGTCAGGGGAAGAACTGAGAGGCGCATACCCCGGCTGTGGCGGCTGCTGCTCTGGGCTGGGACCGCCTTCCAGGTGACCCAGGGAACGGGACCGGAGCTTCATGCCTGCAAAGAG
Seq A exon
TCTGAGTACCACTATGAGTACACGGCGTGTGACAGCACGGGTTCCAGGTGGAGGGTCGCCGTGCCGCATACCCCGGGCCTGTGCACCAGCCTGCCTGACCCCATCAAGGGCACCGAGTGCT
Seq C2 exon
CCTTCTCCTGCAACGCCGGGGAGTTTCTGGATATGAAGGACCAGTCATGTAAGCCATGCGCTGAGGGCCGCTACTCCCTCGGCACAGGCATTCGGTTTGATGAGTGGGATGAGCTGCCCCATGGCTTTGCCAGCCTCTCAGCCAACATGGAGCTGGATGACAGTGCTGCTGAGTCCACCGGGAACTGTACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGGTGACCCAGGGAA
R:
GAAGTACAGTTCCCGGTGGAC
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development