MmuEX0001952 @ mm10
Exon Skipping
Gene
ENSMUSG00000040412 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr3:108482331-108536536:-
Coord C1 exon
chr3:108536296-108536536
Coord A exon
chr3:108488830-108489022
Coord C2 exon
chr3:108482331-108482478
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTCCCTGCTCTGCCTTTCAGCCT
3' ss Score
8.8
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
Exon sequences
Seq C1 exon
TTTTTTTTTTTTTTTTTTTCCTCCTCTGCCAGCATAAGCAGCCACCGCAGCACCTGAGCCGCTACTGCCGCTGGCTCAGGACAGCGCTATGGCAGAGCCTGGTCACAACCCCCATCCTTCTGCCAGAGACGGAGGAAAAACTGAAAGGCGCACACCCCGGCTTCTGTGGCTGTTGCTTTGGGCTGGGACCACCTTCCAGGTGACCCTGGGAACCGGACCCGAGCTTCACGCCTGCAAAGAG
Seq A exon
CCTTCTCTTGCAATGCCGGGGAATTTCTGGATATGAAGGACCAGTCCTGCAAGCCCTGCGCGGAGGGCCGCTACTCCCTCGGCACTGGCATCCGATTTGATGAGTGGGATGAGCTACCTCACGGCTTTGCCAGCCTCTCGGCCAACTTGGAGGTCGATGACAGCATCTCGGAGTCCACTGAGAACTGCACTTC
Seq C2 exon
GTCCAAGTGGGTTCCCCGGGGAGACTACATCGCCTCCAACACAGATGAATGCACCGCCACACTGATGTATGCCGTCAACCTAAAGCAGTCTGGCACCGTTAACTTTGAGTACTACTACCCGGACTCCAGCATCATCTTTGAATTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040412_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.384 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCAGAGACGGAGGAAAA
R:
ATGCTGGAGTCCGGGTAGTAG
Band lengths:
255-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types