GgaEX0009420 @ galGal3
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8065106-8087318:+
Coord C1 exon
chr1:8065106-8065235
Coord A exon
chr1:8085964-8086159
Coord C2 exon
chr1:8087171-8087318
Length
196 bp
Sequences
Splice sites
3' ss Seq
GGAAATGATTGTCTCCCTAGCTT
3' ss Score
3.8
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
TGCTTGCAGACAGATTACCACTTCGAGTACACGGAGTGTGACAGCAGTGGCTCCAGATGGAGGGTGGCTGTCCCGAATCCGTCGGCGGAGTGCTCTGGACTACCTGACCCCGTGAAAGGGAAGGAATGCA
Seq A exon
CTTTCTCCTGTGCCTCTGGCGAGTACTTGGAGATGAAGAACCAGGTGTGCAGCAAATGTGCTGAGGGGACATACTCGCTGGGCAGTGGGATCAAGTTTGATGAATGGGATGAGCTGCCAGCAGGATTTTCCAATGTGGCGACATTCATGGACACAGCAGTGGGCTCAGTTGAGAATAAAGCCAACAGCTGCAACAA
Seq C2 exon
CTCTTCATGGACACCACGAGGGAATTACATCGAGTCAAACAGGGATGATTGTACAGTTTCCCTCATCTACGCCGTGCACCTGAAGAAGTCCGGTTCTGTCTTCTTTGAATACCAATATATTGACAACAACATCTTCTTTGAATTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGCAGACAGATTACCACT
R:
TGGTATTCAAAGAAGACAGAACCGG
Band lengths:
244-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]