GgaEX0009420 @ galGal4
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr1:7470536-7486524:+
Coord C1 exon
chr1:7470536-7470656
Coord A exon
chr1:7485170-7485365
Coord C2 exon
chr1:7486377-7486524
Length
196 bp
Sequences
Splice sites
3' ss Seq
GGAAATGATTGTCTCCCTAGCTT
3' ss Score
3.8
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
ACAGATTACCACTTCGAGTACACGGAGTGTGACAGCAGTGGCTCCAGATGGAGGGTGGCTGTCCCGAATCCGTCGGCGGAGTGCTCTGGACTACCTGACCCCGTGAAAGGGAAGGAATGCA
Seq A exon
CTTTCTCCTGTGCCTCTGGCGAGTACTTGGAGATGAAGAACCAGGTGTGCAGCAAATGTGCTGAGGGGACATACTCGCTGGGCAGTGGGATCAAGTTTGATGAATGGGATGAGCTGCCAGCAGGATTTTCCAATGTGGCAACGTTCATGGACACAGCAGTGGGCTCAGTTGAGAATAAAGCCAACAGCTGCAACAA
Seq C2 exon
CTCTTCATGGACACCACGAGGGAATTACATCGAGTCAAACAGGGATGATTGTACAGTTTCCCTCATCTACGCCGTGCACCTGAAGAAGTCCGGTTCTGTCTTCTTTGAATACCAATATATTGACAACAACATCTTCTTTGAATTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'2-3,'2-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATTACCACTTCGAGTACACGG
R:
TGGTATTCAAAGAAGACAGAACCGG
Band lengths:
234-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]