RnoEX0072814 @ rn6
Exon Skipping
Gene
ENSRNOG00000005818 | RGD1563349
Description
similar to RIKEN cDNA 9330182L06 [Source:RGD Symbol;Acc:1563349]
Coordinates
chr4:21645670-21668570:-
Coord C1 exon
chr4:21668441-21668570
Coord A exon
chr4:21650339-21650534
Coord C2 exon
chr4:21645670-21645817
Length
196 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTTCTGCTTTCCAGCTT
3' ss Score
9.15
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
TGTTTGCAGAAAGATTACCACTTTGAATATACAGAATGTGATAGCACTGGCTCCAGGTGGAGGGTCGCCATTCCGAATTCTGCAGTGGATTGCTCTGGCCTGCCTGACCCAGTGAGAGGCAAAGAATGCA
Seq A exon
CTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAGTGTGTCGAAGGCACTTACTCCCTGGGCAGTGGCATCAAATTTGATGAATGGGATGAGTTGCCGGCAGGATTTTCCAACGTTGCAACATTCATGGACACTGTGGTGGGCCCTTCTGACAGCAGGCCAGATGGCTGTAACAA
Seq C2 exon
CTCTTCTTGGCTTCCTCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGTGTCTCTGATCTACGCTGTACACCTTAAGAAATCAGGCTACGTCTTCTTTGAGTACCAGTATGTGGACAACAACATCTTCTTTGAGTTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005818-'1-5,'1-2,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000007723fB11922
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAATGTGATAGCACTGGC
R:
CTCAAAGAAGATGTTGTTGTCCACA
Band lengths:
242-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]