MmuEX6015887 @ mm10
Exon Skipping
Gene
ENSMUSG00000056004 | 9330182L06Rik
Description
RIKEN cDNA 9330182L06 gene [Source:MGI Symbol;Acc:MGI:2443264]
Coordinates
chr5:9380278-9410731:+
Coord C1 exon
chr5:9380278-9380398
Coord A exon
chr5:9399181-9399376
Coord C2 exon
chr5:9410584-9410731
Length
196 bp
Sequences
Splice sites
3' ss Seq
TATCTTCTTCTGCTTTCCAGCTT
3' ss Score
8.58
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
AAAGATTACCACTTTGAATATACAGAATGTGATAGCACTGGCTCCAGGTGGAGGGTCGCCATTCCGAATTCTGCAGTGGATTGCTCTGGCCTGCCTGACCCAGTGAAAGGCAAAGAATGCA
Seq A exon
CTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAATGTGTGGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGGCAGGATTTTCCAACGTTGCAACATTCATGGACACTGTGGTGGGCCCTTCTGACAGCAGGCCAGATGGCTGTAACAA
Seq C2 exon
CTCTTCTTGGCTTCCTCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGTGTCTTTGATCTACGCTGTGCACCTGAAGAAGTCTGGCTACGTCTTCTTTGAGTACCAGTACGTGGACAACAACATCTTCTTTGAGTTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056004-'5-10,'5-9,9-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000069538fB189
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAATGTGATAGCACTGGC
R:
CTCAAAGAAGATGTTGTTGTCCACG
Band lengths:
242-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types