BtaEX6026758 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33649103-33680452:+
Coord C1 exon
chr4:33649103-33649223
Coord A exon
chr4:33671823-33672018
Coord C2 exon
chr4:33680305-33680452
Length
196 bp
Sequences
Splice sites
3' ss Seq
TTATGCATTTTGCCTTCCAGCTT
3' ss Score
9.01
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
AAAGATTACCACTTTGAATATACAGAATGTGATAGCAGTGGCTCCAGGTGGAGAGTTGCCATTCCGAATTCCGCAGTGGACTGCTCTGGCCTGCCTGACCCAGTGAGAGGCAAAGAATGCA
Seq A exon
CTTTCTCCTGTGCTTCTGGGGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAGTGTGGTGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGACGAATGGGATGAATTGCCGGCTGGATTTTCCAACGTCGCAACATTCATGGACACTGTGGTCGGCCCTTCTGATAGCAGGCCAGAGGGCTGTAACAA
Seq C2 exon
CTCTTCTTGGGTCCCTCGTGGAAACTACATAGAGTCCAATCGTGATGACTGCACAGTATCCTTGATCTATGCTGTGCACCTCAAGAAGTCAGGTTATGTCTTCTTTGAGTACCAATATGTGGACAACAACATCTTCTTTGAGTTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023-'6-6,'6-5,9-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAATGTGATAGCAGTGGC
R:
CTCAAAGAAGATGTTGTTGTCCACA
Band lengths:
242-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]