HsaEX6032574 @ hg38
Exon Skipping
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr1:109113679-109172013:+
Coord C1 exon
chr1:109113679-109162014
Coord A exon
chr1:109164499-109164691
Coord C2 exon
chr1:109171866-109172013
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGCCCTGTTTTCCAGCCT
3' ss Score
8.63
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
Exon sequences
Seq C1 exon
ACATCCTTCCATTTAGAATGTCCTCGTTCATAAATTCTACACTTTGGAATAAGAAAAATTCCACCTATTTCTAGCCTGTTCCTTAGTTACCTTTCCCACGTTCCTCTGCTCCATAAGGACACTACTTAAACATAACAACAAAGAGAGTCACACACAAAAATGATTTCTAGGGACTAGACCATGGCTGGGTGGAAGGGAATGATCCAAATCATTGTAGTTCTTGTACTCGGTTCATAATCATCAGCTCCCTGCCCGGGGTCCCAGGGCCCATTTCTGAGAGGATGAGCATCAGTAGCCATGGTGCTGGGAAGTGGGTGGGAAGCTGTTAATGTTTGATCACTGCTAATGCACATTTCGCCCACTGTTCTCTCCCCTGCAGTCTGAGTACCACTATGAGTACACGGCGTGTGACAGCACGGGTTCCAGGTGGAGGGTCGCCGTGCCGCATACCCCGGGCCTGTGCACCAGCCTGCCTGACCCCATCAAGGGCACCGAGTGCT
Seq A exon
CCTTCTCCTGCAACGCCGGGGAGTTTCTGGATATGAAGGACCAGTCATGTAAGCCATGCGCTGAGGGCCGCTACTCCCTCGGCACAGGCATTCGGTTTGATGAGTGGGATGAGCTGCCCCATGGCTTTGCCAGCCTCTCAGCCAACATGGAGCTGGATGACAGTGCTGCTGAGTCCACCGGGAACTGTACTTC
Seq C2 exon
GTCCAAGTGGGTTCCCCGGGGCGACTACATCGCCTCCAACACGGACGAATGCACAGCCACACTGATGTACGCCGTCAACCTGAAGCAATCTGGCACCGTTAACTTCGAATACTACTATCCAGACTCCAGCATCATCTTTGAGTTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299-'9-15,'9-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGTAGCCATGGTGCTGG
R:
CGTGTTGGAGGCGATGTAGTC
Band lengths:
257-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains