BtaEX6016110 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34345157-34353121:-
Coord C1 exon
chr3:34352983-34353121
Coord A exon
chr3:34350319-34350511
Coord C2 exon
chr3:34345157-34345304
Length
193 bp
Sequences
Splice sites
3' ss Seq
TCCCCGCTCTTGTGTTCCAGCCT
3' ss Score
9.61
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
Exon sequences
Seq C1 exon
CCCTTCTCTCCCCTGCAGTCTGAGTACCACTATGAGTACACCGCGTGTGACAGCACAGGTTCCAGGTGGAGGGTCGCCGTGCCGCACACCCCGGGCCTGTGTACCAGCCTCCCCGACCCCGTCAAGGGCACCGAGTGCT
Seq A exon
CCTTCTCTTGCAAAGCTGGGGAGTTTCTGGACATGAAGGACCAGTCGTGTAAGCCGTGTGCTGAGGGTCGCTACTCCCTTGGCACAGGCATCCGGTTCGATGAGTGGGATGAACTGCCCCATGGCTTTGCCAGCCTCTCAACCAACATGGAGATTGAGGACAGCACCTTGGAGTCCACCGAAAACTGTACTTC
Seq C2 exon
GTCCAAGTGGGTTCCGCTGGGAGACTATATCGCCTCCAACACAGACGAGTGCACGGCCACGCTGATGTATGCCGTCAACCTGAAGCAGTCCGGCACTGTTAACTTTGAATACTACTACCCAGACTCTAGCATCATCTTCGAGTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136-'1-3,'1-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTCCCCTGCAGTCTGAG
R:
TCAAAGTTAACAGTGCCGGACT
Band lengths:
244-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]