GgaEX1031815 @ galGal4
Exon Skipping
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1129226-1130795:+
Coord C1 exon
chr26:1129226-1129532
Coord A exon
chr26:1129741-1129933
Coord C2 exon
chr26:1130648-1130795
Length
193 bp
Sequences
Splice sites
3' ss Seq
CACCCCCTGCATGTGGGCAGCTT
3' ss Score
4.21
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATGGGGGGTGTTGTTCTCCCTAACCCGGCCCCCAGCAGCCTCGTCCCTAAGTGTGTTCCACAGCATGCTGGGTGCTGTGGGATTGGCACCAGCCAAAAGAGCCCCCATATCCCAACAGCGGCAGCTGAGCTCGCTGGGGGTCCCATCCCCGTGGGGTCTCAGCCCTCCACGCGTTCTCTCTTGCAGTCGGAGTACCACTACGAGTACACAGCATGCGACAGCGCGGGCGCACGGTGGAGGGTGGCGGTGCCGCACACACCGGGACTCTGCACCGGGCTGCCGGACCCCGTCAAGGGCACCGAGTGCT
Seq A exon
CTTTCTCCTGCAAGGCGGGCGAGTTCCTCGACATGAAGGCGCAGGCGTGCAAGCCCTGTGCTGAGGGCACCTACTCACTGGGCACCGGAGTGCGCTTCGATGAGTGGGATGAGCTGCCCCACGGCTTCGCCAACGTCGCCACCAACCTGGAGTTGGATGATGGCTTCAGCGATGTGGTGGAGAACTGCACCAC
Seq C2 exon
GTCGACGTGGGTGCCGCTGGGGGATTACATCGCCTCCAACACCGATGAGTGCACGGCCACGCTGATGTACGCCGTCAGCCTGAAGCAGTCGGGCACCGTCTCCTTTGAGTACATCTACCCCGACAGCAGCATCGTCTTTGAGTTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986-'0-3,'0-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCCCCCATATCCCAACA
R:
GTTGGAGGCGATGTAATCCCC
Band lengths:
251-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]