BtaEX0019880 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33270480-33279443:-
Coord C1 exon
chr24:33279352-33279443
Coord A exon
chr24:33274426-33274541
Coord C2 exon
chr24:33270480-33270598
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTGTTATATGCCCAGGTT
3' ss Score
5.47
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TATTATTACAGCATAAAGGATATCAGCATCGGTGGGCGGTGTGTTTGCAACGGCCATGCTGAAGTGTGCAATGCAAACAATCCGGAAAAACT
Seq A exon
GTTTCGGTGTGAATGCCAGCACAATACTTGCGGGGACACGTGTGATCGCTGTTGCATGGGGTACAATCAGAGGCGCTGGCGGCCTGCCACGGGGAAGCAGAGCAATGAGTGTGAAG
Seq C2 exon
CATGCAACTGCCATGGACACTCCACCGACTGTTACTATGATCCGGATGTTGAGAGGCAGCAGGCAAGCTTGAATATCCAAGGCCTCTATGCAGGTGGAGGGGTCTGCATTAACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(5.5=35.5)
A:
NO
C2:
PF0005319=Laminin_EGF=PU(55.9=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATAAAGGATATCAGCATCGG
R:
GACAGTTAATGCAGACCCCTCC
Band lengths:
202-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development