MmuEX6000340 @ mm10
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12407487-12413857:+
Coord C1 exon
chr18:12407487-12407578
Coord A exon
chr18:12411540-12411655
Coord C2 exon
chr18:12413739-12413857
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGCCTTTATGCTCAGGTT
3' ss Score
7.59
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TATTATTACAGCATAAAGGATATCAGTGTTGGTGGGCGGTGTGTTTGCAACGGCCATGCGGAGGCGTGCAGTGCTGACAACCCTGAAAAGCA
Seq A exon
GTTCCGATGCGAATGCCAGCACCATACCTGTGGAGACACGTGTAACCGCTGCTGTGCAGGTTACAATCAGAGGCGCTGGCAGCCTGCTGGTCAGGAGCAGCACAATGAGTGTGAAG
Seq C2 exon
CCTGCAACTGCCATGGGCATGCTGTGGACTGCTACTATGACCCAGACGTGGAGCACCAGCAGGCGAGCTTGAACAGCAAAGGCGTCTACGCAGGTGGAGGGGTCTGCATCAACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-'2-12,'2-7,11-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(4.4=35.5)
A:
NO
C2:
PF0005319=Laminin_EGF=PU(55.9=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATAAAGGATATCAGTGTTGGTGG
R:
CTGACAGTTGATGCAGACCCC
Band lengths:
202-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types