RnoEX6058098 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3762984-3768948:+
Coord C1 exon
chr18:3762984-3763075
Coord A exon
chr18:3766556-3766671
Coord C2 exon
chr18:3768830-3768948
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGCTTTTATTCTCAGGTT
3' ss Score
9.69
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TATTACTACAGCATAAAGGACATCAGTGTCGGTGGGCGGTGTGTTTGCAACGGCCATGCGGAGGCCTGCAGCGCTGACAACCCTGAAAAGCA
Seq A exon
GTTCCGATGCAAATGCCAGCACCATACCTGTGGGGACACGTGTAATCGCTGCTGTGCAGGCTACAATCAGAGGCCCTGGCGGCCCGCTGCTCAGGACCAGCACAATGAGTGTGAAG
Seq C2 exon
CCTGCAACTGCCATGGGCACGCCGTGGACTGTTACTATGACGAGGCTGTGTCGCGTCAGCAGGCGAGCTTAAACAGCAAAGGTGTCTACACAGGCGGAGGGGTCTGCATTGACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'6-8,'6-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(4.5=35.5),PF0005319=Laminin_EGF=PU(30.9=54.8)
A:
PF0005319=Laminin_EGF=PD(67.3=92.5)
C2:
PF0005319=Laminin_EGF=PU(55.9=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGCATAAAGGACATCAGTGT
R:
CAGTCAATGCAGACCCCTCC
Band lengths:
203-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]