GgaEX6021372 @ galGal3
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106295392-106303792:+
Coord C1 exon
chr2:106295392-106295489
Coord A exon
chr2:106298053-106298168
Coord C2 exon
chr2:106303674-106303792
Length
116 bp
Sequences
Splice sites
3' ss Seq
AAGTGACTTTCATTCTGCAGGTT
3' ss Score
7.77
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
TATTACTACAGTATAAAGGACATCAGTATTGGTGGTCGATGTGTTTGCCATGGCCATGCGGAAGTATGTAATGCGAAAAGTGCTGAAAACCAATACCA
Seq A exon
GTTTCATTGTGAATGCCAGCATAACACTTGTGGGGAAACCTGTGACCGCTGCTGCCCTGGATATAATCAGAAACAGTGGCAACCTGCGACAGCTGGGAACATAAATATATGTGAAC
Seq C2 exon
CCTGCAATTGCCATGGACATGCCACTGACTGCTACTATGATGCTGATGTTGATCAGCGTCGAGAAAGCCTAAATATTCATGGGCATTATGAAGGTGGAGGAGTCTGCATTAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PD(4.4=33.3),PF0005319=Laminin_EGF=PU(36.5=57.6)
A:
PF0005319=Laminin_EGF=PD(61.5=80.0)
C2:
PF0005319=Laminin_EGF=PU(55.9=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATAAAGGACATCAGTATTGGTGGT
R:
CAGTTAATGCAGACTCCTCCACC
Band lengths:
203-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]