BtaEX0019895 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003061 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr13:55407486-55408065:+
Coord C1 exon
chr13:55407486-55407620
Coord A exon
chr13:55407703-55407837
Coord C2 exon
chr13:55407928-55408065
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGACCCCAAGTCCTCTGCAGCCT
3' ss Score
1.26
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TGTGTGGCTGCAGCCCCGTGGGGACCCTCCCCGAGGGTTGTGACGACGCTGGCCGCTGCCTGTGCCGGCCAGAGTTCAATGGCCCCCACTGTGACCGCTGTCGCCTGGGCTACCACGGCTATCCCGAGTGCCATG
Seq A exon
CCTGTGCCTGTGACCCCCGGGGCTCCGTGGACCAGCTGTGTGGGGCAGGCGGGCTGTGCCGCTGCTGTTCCGGGTACGCGGGATCCACCTGCCAGGAGTGCAGCCCCGGCTTCCACGGCTTCCCTGACTGTGCCC
Seq C2 exon
CCTGCCACTGCTCTCCCGAAGGTTCCCTGCATGCAGCCTGCGATCCCCACAGCGGGCAGTGCAGCTGCCGACCGCGAGTGACAGGACTGCGGTGCGACATGTGTGTGCCTGGTGCATACAACTTCCCCTATTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003061-'17-17,'17-16,18-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=97.8)
A:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=WD(100=97.8)
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=PU(91.8=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCGAGGGTTGTGAC
R:
TCGCAATAGGGGAAGTTGTATGC
Band lengths:
246-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development