DreEX6079175 @ danRer10
Exon Skipping
Gene
ENSDARG00000058543 | lama5
Description
laminin, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9823]
Coordinates
chr23:9733070-9736112:-
Coord C1 exon
chr23:9735978-9736112
Coord A exon
chr23:9733288-9733422
Coord C2 exon
chr23:9733070-9733207
Length
135 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTATTATTTCCCAGTGT
3' ss Score
7.81
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ATTGTGGTTGCAGTGTCGTGGGATCTATACCCGAGATGTGTGATCCGGCTGGTCGATGTTTGTGTAGGCCGGAGTTCACTGGTCCTCGCTGTGATCAGTGTCAGTCAGGCTTCCACTCATATCCAAATTGCCAAG
Seq A exon
TGTGCACTTGTGACCCCCGCACATCTTTGGACTCCAGCTGTAGTGAGTTGGATCAGTGTAACTGCAGACCAAACTACAGCGGCCCCAGATGTCAGCAGTGCGCACCAGGATACTACTCTTATCCCAGCTGCACAC
Seq C2 exon
CATGTGATTGCTCAGTGGAGGGCTCTCGCTCCAGCTCCTGTGATCCAGTGTCAGGACAGTGTGTGTGTCTGCCGAACATCGAGGGTCAGAGGTGTGACAGCTGCAGTCCTGGGTCATATGGCTTCCCCCTTTGCCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058543-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=97.8)
A:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=WD(100=97.8)
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=PU(91.8=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGTTGCAGTGTCGTGG
R:
ATATGACCCAGGACTGCAGCT
Band lengths:
254-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]