GgaEX0007352 @ galGal3
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
NA
Coordinates
chr20:7843159-7846611:-
Coord C1 exon
chr20:7846474-7846611
Coord A exon
chr20:7844824-7844958
Coord C2 exon
chr20:7843159-7843296
Length
135 bp
Sequences
Splice sites
3' ss Seq
CATCAGTCCTGCTCTTCCAGCTT
3' ss Score
5.67
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
CCTGCCAGTGCTCCGGCCCAGGTCAGTACGATGGCACCTGTGACAGTGAGACAGGACAGTGCCTGTGTCGAACAGGATTTGAAGGGCAATTGTGTGATCGGTGCGCTCCCGGCTACTTCAACTACCCCCTGTGCCAGT
Seq A exon
CTTGCTCCTGCGACTCCCGGGGTGCTGTGGACAACAACTGCAGCCCAGCTGGCCAGTGCCGATGCCATGTGAATTTTACGGGGCACACCTGCAACCAATGTGCCCTGGGCTTCTACGGGTACCCCAGCTGCACAC
Seq C2 exon
CCTGCCAGTGCTCCAGGGAGGGCTCTCTGCACAGTACGTGTAACCAGGAGACGGGGCAGTGCAGCTGCCGGCCCAAAGTGACAGGGCTGCGCTGTGACAGCTGCGTGCCGGGTGCCTATGGATTTCCACACTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.7)
A:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=WD(100=97.8)
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=PU(91.8=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTACGATGGCACCTGTG
R:
GAAATCCATAGGCACCCGGC
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]