MmuEX6107469 @ mm10
Exon Skipping
Gene
ENSMUSG00000015647 | Lama5
Description
laminin, alpha 5 [Source:MGI Symbol;Acc:MGI:105382]
Coordinates
chr2:180198261-180198830:-
Coord C1 exon
chr2:180198696-180198830
Coord A exon
chr2:180198475-180198609
Coord C2 exon
chr2:180198261-180198398
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCTGTGTGCCCACAGCTT
3' ss Score
10.79
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
TGTGTGGCTGCAGCCCAGCAGGGACCTTGCCTGAAGGCTGTGACGAGGCTGGCCGCTGCCAGTGCCGACCTGGCTTTGACGGTCCTCACTGTGACCGATGCCTTCCAGGATACCATGGGTATCCCGACTGTCACG
Seq A exon
CTTGTGCCTGTGACCCTCGGGGGGCCCTGGATCAGCAGTGTGGAGTGGGCGGTTTGTGCCACTGCCGTCCTGGCTACACAGGTGCCACTTGTCAGGAATGTAGCCCCGGCTTCTACGGCTTCCCCAGCTGCATCC
Seq C2 exon
CCTGCCACTGCTCTGCCGATGGCTCCTTGCATACAACCTGTGACCCGACAACCGGCCAGTGTAGGTGTCGACCCCGAGTGACAGGACTACATTGTGATATGTGTGTACCAGGCGCCTATAACTTCCCCTACTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015647-'28-23,'28-22,29-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=97.8)
A:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=WD(100=97.8)
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=PU(91.8=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGGACCTTGCCTGAAG
R:
AGGGGAAGTTATAGGCGCCTG
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types