BtaEX0019900 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003061 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr13:55417567-55418477:+
Coord C1 exon
chr13:55417567-55417771
Coord A exon
chr13:55417997-55418141
Coord C2 exon
chr13:55418337-55418477
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCCTGACCTCTCATGGCAGGTG
3' ss Score
9.18
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CCTGTGACTGCAGCGGCCGCCTCTGTGATGAGCTCACAGGCCAGTGCATCTGCCCCCCGCGCACCATCCCGCCCGACTGCCTCGTCTGCCAGCCCCAGACCTTTGGCTGCCACCCCCTGGTGGGCTGTGAGGAGTGTAACTGCTCGGGGCCCGGTGTCCAGGAGCTCATGGATCCCACCTGCGATGCGGACAGTGGCCAGTGCAA
Seq A exon
GTGCAGACCCAACGTGGCCGGACGCCGCTGTGACACCTGTGCTCCGGGGTTCCATGGCTTCCCCAGCTGCCGCCCCTGTGACTGCCATGAGGCAGGCTCTGCGCCCGGCACGTGTGACCCCCTCACAGGCCAGTGCTACTGCAAG
Seq C2 exon
GAGAACGTGCAGGGCCCGAGGTGTGACCAGTGCCGCCTGGGGACATTCTCACTGGATGCTGCCAACCCCAAAGGCTGCACCCGCTGCTTCTGCTTCGGGGCCACTGACCGCTGCCGGAGCTCGACGTATGCCCGTCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003061-'40-43,'40-42,41-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(6.1=4.3),PF0005319=Laminin_EGF=PU(46.9=33.3)
A:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
C2:
PF0005319=Laminin_EGF=PD(51.0=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGCTCACAGGCCAGT
R:
GTTGGCAGCATCCAGTGAGAA
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development