MmuEX6107486 @ mm10
Exon Skipping
Gene
ENSMUSG00000015647 | Lama5
Description
laminin, alpha 5 [Source:MGI Symbol;Acc:MGI:105382]
Coordinates
chr2:180190905-180191755:-
Coord C1 exon
chr2:180191551-180191755
Coord A exon
chr2:180191228-180191372
Coord C2 exon
chr2:180190905-180191045
Length
145 bp
Sequences
Splice sites
3' ss Seq
TAGCCTTTGTCCGCACACAGATG
3' ss Score
6.32
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCTGTGACTGTGGAGCCCGCCTGTGTGACGAGCTCACGGGCCAGTGTATCTGTCCACCACGCACTGTTCCCCCTGACTGCTTGGTCTGCCAGCCACAGAGCTTTGGTTGCCACCCCTTGGTGGGCTGTGAGGAGTGTAACTGCTCAGGGCCCGGCGTCCAGGAGCTGACGGACCCTACCTGTGACATGGACAGCGGCCAGTGCAG
Seq A exon
ATGCAGACCCAATGTAGCTGGACGTCGCTGTGATACCTGTGCCCCGGGCTTCTATGGCTATCCTAGCTGTCGCCCCTGTGACTGCCATGAGGCAGGCACCATGGCTAGCGTGTGTGACCCCCTCACAGGCCAATGCCATTGCAAG
Seq C2 exon
GAGAACGTGCAGGGCTCAAGATGTGACCAGTGTCGCGTGGGGACCTTCTCCTTGGATGCTGCTAACCCCAAGGGCTGTACCCGCTGCTTCTGTTTCGGGGCCACAGAGCGCTGTGGGAACTCTAACCTCGCCCGCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015647-'55-65,'55-63,56-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(6.1=4.3),PF0005319=Laminin_EGF=PU(46.9=33.3)
A:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
C2:
PF0005319=Laminin_EGF=PD(51.0=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCTGTCCACCACGCACTG
R:
AAACAGAAGCAGCGGGTACAG
Band lengths:
255-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types