GgaEX1032846 @ galGal4
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr20:8196108-8197317:-
Coord C1 exon
chr20:8197113-8197317
Coord A exon
chr20:8196756-8196900
Coord C2 exon
chr20:8196108-8196248
Length
145 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTGCATCCTGCTCAGGTG
3' ss Score
7.91
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCTGTGACTGTGGGACACGACTCTGCGACGAGGTGACAGGGCAGTGCATCTGCCCTCCTCACACCCTGAAGCCAGAATGTGTTGTCTGTGAGCCCCAGACCTTCGGTTGCCATCCCCTCATCGGCTGTGAGGACTGCAATTGCTCGCAGCCTGGAGTGCAGGAGCTGACAGAGCTTGGCTGTGATGTGGACAGCGGGCAGTGCAA
Seq A exon
GTGTAAGCCCAATGTAATTGGGCGACGGTGTGACCTCTGTGCCCCTGGCTACTACCACTATCCCAGCTGTCGGCGGTGTGACTGCCATCCTGATGGCACCGAAGTGAGCGTGTGTGACCCGGTGACGGGGCAGTGTCACTGCAAG
Seq C2 exon
GAAAATGTGGAGGGTCCGAGGTGTGACCAGTGCCGCCTGGGGACGTTTTCTTTGGATGCCAGCAACCCCAAGGGGTGCACCAAGTGTTTCTGCTTTGGTGCCACCAATCGCTGCCGCAGTGCTGTGAAGTACCGAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321-'40-50,'40-48,41-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(6.1=4.3),PF0005319=Laminin_EGF=PU(46.9=33.3)
A:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
C2:
PF0005319=Laminin_EGF=PD(51.0=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTGAAGCCAGAATGTGT
R:
TGGCACCAAAGCAGAAACACT
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]