BtaEX0020274 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000013030 | LLRC8A

Description

Bos taurus leucine rich repeat containing 8 family, member A (LRRC8A), mRNA. [Source:RefSeq mRNA;Acc:NM_001076807]

Coordinates

chr11:99411393-99432003:+

Coord C1 exon

chr11:99411393-99411488

Coord A exon

chr11:99414696-99414798

Coord C2 exon

chr11:99429839-99432003

Length

103 bp

Sequences

Splice sites

3' ss Seq

TAGCTCTTGCTTCCTCGTAGGCA

3' ss Score

6.84

5' ss Seq

AGGGTAAGG

5' ss Score

9.16

Exon sequences

Seq C1 exon

CAAAAGGAGGCGCCGGAGGGGCGCAGTGACCGGCAGTGGGACAGAGCGGCAGGGGCTCGGGGCTGCCGGCTGGGCGGCCGGGCGCGGCGGGCCCAG

Seq A exon

GCAGGCGGCTTCCATGGAGCGAAAGGAATGCCAAGACCCTGCCCAGACAGACGTGGGCCAGCCTCAGCACCATCAGCCAGCTCTCAGATAGCAGAGCCTCAGG

Seq C2 exon

ATTGAACCATGATTCCGGTGACAGAGCTCCGCTACTTTGCGGACACGCAGCCAGCGTACCGGATCCTGAAGCCGTGGTGGGACGTGTTCACCGACTACATCTCCATCGTCATGCTGATGATTGCTGTCTTCGGGGGCACGCTGCAGGTTACCCAGGACAAGATGATCTGCCTGCCCTGTAAGTGGGTCACCAAGGACTCCTGCAACGACTCGTTCCGGGGCTGGGCGGCCCCTGGCCCAGAGCCCCCCTACCCCAACTCCACCATCGGGCCGACCCCCGACTCCGGCCCCACCGGCATCAAGTACGACCTGGACCGGCACCAGTACAACTATGTGGACGCCGTGTGCTATGAGAACCGCCTGCACTGGTTTGCCAAGTACTTCCCCTACCTGGTGCTTCTGCACACGCTCATCTTCCTGGCCTGCAGCAACTTCTGGTTCAAGTTCCCGCGCACCAGCTCCAAGCTGGAGCACTTCGTGTCCATCCTGCTCAAGTGCTTC

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000013030_CASSETTE1

Average complexity

S*

Mappability confidence:

100%=100=100%

Protein Impact

5' UTR

No structure available

Features

Disorder rate (Iupred):

C1=NA A=NA C2=0.017

Domain overlap (PFAM):

C1:

NA

A:

NA

C2:

PF125343=DUF3733=WD(100=9.0),PF125343=DUF3733=WD(100=8.3),PF127992=LRR_4=WD(100=5.1),PF138551=LRR_8=WD(100=8.5),PF127992=LRR_4=WD(100=6.3),PF138551=LRR_8=PU(18.6=1.5)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

NA

Associated events

Conservation

Human

(hg38)