MmuEX0027085 @ mm9

Exon Skipping

Gene

ENSMUSG00000007476 | Lrrc8a

Description

leucine rich repeat containing 8A [Source:MGI Symbol;Acc:MGI:2652847]

Coordinates

chr2:30093235-30112852:+

Coord C1 exon

chr2:30093235-30093325

Coord A exon

chr2:30096089-30096197

Coord C2 exon

chr2:30110688-30112852

Length

109 bp

Sequences

Splice sites

3' ss Seq

TAGCTCTCCCTTTCTCATAGGGC

3' ss Score

7.5

5' ss Seq

AGGGTAAGC

5' ss Score

9.04

Exon sequences

Seq C1 exon

AGGAGGCGCTGGAGGAGCGCGGCGGCGGGCGGCCGGACTGGGAGGTGGAGGGCCCGGGCTGCCTGCGGGCGGCTGCGAGCGGAGAGCCCAG

Seq A exon

GGCAGCAGCAGCGTCCATGGAGCAAAAGGAATGTCAGGGCCCTGTGCATCCAGACAGGGACCAGCCTCAGCACCAACAGCCAACACAAAGATAGCAGAGTCATCTCAGG

Seq C2 exon

GTTAAACCATGATTCCGGTGACAGAGCTCCGCTACTTTGCGGACACACAGCCAGCATACCGGATCCTGAAGCCTTGGTGGGATGTGTTCACTGATTACATCTCCATCGTCATGCTGATGATTGCTGTCTTTGGAGGGACGCTGCAAGTCACCCAGGACAAGATGATCTGCCTACCTTGTAAGTGGGTCACCAAAGACTCCTGCAACGACTCCTTCCGGGGCTGGGCAGCCTCCAGCCCAGAGCCCACTTACCCCAACTCCACAGTCCTGCCGACGCCTGACACAGGCCCCACAGGTATCAAGTATGACCTAGATCGACACCAGTACAACTACGTGGATGCGGTGTGCTACGAGAACCGCCTGCATTGGTTTGCCAAGTACTTCCCCTACCTCGTGCTTCTGCACACCCTCATCTTCCTGGCCTGTAGCAACTTCTGGTTCAAGTTTCCACGCACCAGTTCGAAGCTGGAACACTTTGTGTCTATCCTGCTCAAGTGCTTC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000007476_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

5' UTR

No structure available

Features

Disorder rate (Iupred):

C1=NA A=NA C2=0.013

Domain overlap (PFAM):

C1:

NA

A:

NA

C2:

PF125343=DUF3733=WD(100=9.0),PF125343=DUF3733=WD(100=8.3),PF127992=LRR_4=WD(100=5.8),PF138551=LRR_8=WD(100=8.5),PF127992=LRR_4=WD(100=6.1),PF138551=LRR_8=PU(18.6=1.5)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

NA

Associated events

Other assemblies

mm10

Conservation