HsaEX0036698 @ hg19
Exon Skipping
Gene
ENSG00000136802 | LRRC8A
Description
leucine rich repeat containing 8 family, member A [Source:HGNC Symbol;Acc:19027]
Coordinates
chr9:131644781-131671600:+
Coord C1 exon
chr9:131644781-131645188
Coord A exon
chr9:131648294-131648400
Coord C2 exon
chr9:131669436-131671600
Length
107 bp
Sequences
Splice sites
3' ss Seq
CAGCTCTCGCTTCCTTGTAGGGA
3' ss Score
7.06
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTGCTTCAGAAACCAGGAGTTTCCGCCTCGGCTCCCCCATGTCCCCTTGTCATCCCCTGGGTCCCCCCAGATCCTCACCCCTCCACACACACTCTCCCGTTCCTAGAGGTTCCACCTCTGGGCTCTCTCCTTGCCATTTCTTTTTCAAAGATTTCCTTAGCTGTCTTCTCCTGAGTTCCTGGTCCCCTTCTCTTCCCTTGCACCCCTCCTTCCTATCGTTCCGATGGGGGCAGTGCCCTGACTTGGGGGCAGGATCCCCGGCTAGGCTCTTGGGGCCTTTCTGGGATGGGATATTTGGGAAGACCGGTCCGGAATCTAAGAACCCAGACCCTGTCCCAGTCCTGTGCATTCAGGTGGGCCCGAGGGCGAGGCGAGATCCAGTGAGGTCCAGGCCTGGTGCAGCCCTAG
Seq A exon
GGAGGCAGCGTCCATGGAGCAAAAGGAATGCCAGGATCCTGCACAGGCAGACGCGGGCCAGCCTCAGCACCGACAGCCGACGCGCAGATAGCAGAGCCATCCTTGGG
Seq C2 exon
GTTGAACCATGATTCCGGTGACAGAGCTCCGCTACTTTGCGGACACGCAGCCAGCATACCGGATCCTGAAGCCGTGGTGGGATGTGTTCACAGACTACATCTCTATCGTCATGCTGATGATTGCCGTCTTCGGGGGGACGCTGCAGGTCACCCAAGACAAGATGATCTGCCTGCCTTGTAAGTGGGTCACCAAGGACTCCTGCAATGATTCGTTCCGGGGCTGGGCAGCCCCTGGCCCGGAGCCCACCTACCCCAACTCCACCATTCTGCCGACCCCTGACACGGGCCCCACAGGCATCAAGTATGACCTGGACCGGCACCAGTACAACTACGTGGACGCTGTGTGCTATGAGAACCGACTGCACTGGTTTGCCAAGTACTTCCCCTACCTGGTGCTTCTGCACACGCTCATCTTCCTGGCCTGCAGCAACTTCTGGTTCAAATTCCCGCGCACCAGCTCGAAGCTGGAGCACTTTGTGTCTATCCTGCTGAAGTGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136802-'1-5,'1-2,4-5
Average complexity
C1
Mappability confidence:
100%=67=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.011
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF125343=DUF3733=WD(100=9.0),PF125343=DUF3733=WD(100=8.3),PF127992=LRR_4=WD(100=5.8),PF138551=LRR_8=WD(100=8.5),PF127992=LRR_4=WD(100=6.3),PF138551=LRR_8=PU(18.6=1.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCCCTTCTCTTCCCTTG
R:
GCTCTGTCACCGGAATCATGG
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)