RnoEX0051054 @ rn6
Exon Skipping
Gene
ENSRNOG00000025296 | Lrrc8a
Description
leucine rich repeat containing 8 VRAC subunit A [Source:RGD Symbol;Acc:1311690]
Coordinates
chr3:8802852-8823070:+
Coord C1 exon
chr3:8802852-8802897
Coord A exon
chr3:8805723-8805831
Coord C2 exon
chr3:8820906-8823070
Length
109 bp
Sequences
Splice sites
3' ss Seq
TAACTCTTGCTTTCTCATAGGGC
3' ss Score
9.02
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGAGGGCCAAGGCTGCCTGCCCGGCGGCTGCGAGCGGCGAGCCCAG
Seq A exon
GGCAGCAGCAGCGTCCATGGAGCAAAAGGAATGTCAGGACCCTGTGCATCCAGACGGGGACCAGCCTCAGCACCAACAGCCAACACAAAGATAGCAGAGCCATCTCAGG
Seq C2 exon
GTTAAACCATGATTCCGGTGACAGAGCTCCGCTACTTCGCGGACACGCAGCCAGCATACCGGATCCTGAAGCCGTGGTGGGATGTGTTCACTGACTACATCTCCATTGTCATGCTGATGATTGCTGTCTTTGGGGGGACACTGCAAGTCACCCAGGACAAGATGATCTGCCTACCTTGTAAGTGGGTCACCAAAGACTCCTGCAACGACTCCTTCCGGGGCTGGGGGGCCTCCAGCCCAGAGCCCACTTACCCCAACTCCACAGTCCTGCCTACTCCTGACACGGGCCCCACAGGTATCAAGTATGACCTAGATCGCCACCAGTACAACTACGTGGATGCCGTGTGTTACGAGAACCGCCTGCATTGGTTTGCCAAGTACTTCCCCTACCTCGTGCTCCTGCACACCCTCATCTTCCTGGCCTGCAGCAACTTCTGGTTCAAGTTCCCACGCACCAGCTCGAAGCTGGAGCACTTCGTGTCTATCCTGCTCAAGTGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025296-'2-15,'2-1,11-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.013
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF125343=DUF3733=WD(100=9.0),PF125343=DUF3733=WD(100=8.3),PF127992=LRR_4=WD(100=5.8),PF138551=LRR_8=WD(100=8.5),PF127992=LRR_4=WD(100=6.7),PF138551=LRR_8=PU(18.6=1.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]