BtaEX0020534 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010830 | LRP1
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
Coordinates
chr5:56602094-56603943:-
Coord C1 exon
chr5:56603863-56603943
Coord A exon
chr5:56603178-56603228
Coord C2 exon
chr5:56602094-56602261
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGGCGGTTTCTGTGTTTCAGAGA
3' ss Score
9.48
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
CCTATCCCACCTGCTTCCCCCTGACTCAGTTTACCTGCAACAATGGCAGATGCATCAACATCAACTGGAGATGTGACAATG
Seq A exon
AGAAGGATTGTGGGGACGGCTCTGATGAAAAGACCTGTCCTGAGCCTGCCG
Seq C2 exon
ACAATGACTGTGGGGACAACAGCGATGAGGCGGGCTGCAGCCACTCCTGCTCTAGCACCCAGTTCAAGTGCAACAGCGGGCGCTGCATCCCTGAGCACTGGACCTGCGACGGGGACAACGACTGCGGGGACTACAGCGACGAGACACATGCCAACTGCACCAACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010830_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
A:
PF0005713=Ldl_recept_a=PD(31.6=66.7)
C2:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
Main Inclusion Isoform:
ENSBTAT00000017556fB3901
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCCCCCTGACTCAGTTT
R:
GCTGTTGCACTTGAACTGGGT
Band lengths:
147-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development