DreEX0005587 @ danRer10
Exon Skipping
Gene
ENSDARG00000097827 | LRP1 (2 of 2)
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
Coordinates
chr11:1712381-1715431:+
Coord C1 exon
chr11:1712381-1712461
Coord A exon
chr11:1712582-1712632
Coord C2 exon
chr11:1715264-1715431
Length
51 bp
Sequences
Splice sites
3' ss Seq
ACATTGGCTGTGTGTTGCAGAGA
3' ss Score
7.88
5' ss Seq
CCGGTTAGT
5' ss Score
6.1
Exon sequences
Seq C1 exon
CGTACCCGACCTGTTTCCCGCTCACTCAGTTCACCTGCAACAACGGCCGCTGCATCAACATCAACTGGCGCTGTGATAACG
Seq A exon
AGAAGGATTGTGGGGACAGCTCTGATGAGTTCAACTGTCCAAACCCAACCG
Seq C2 exon
ACAATGACTGTGGTGATAACAGTGATGAAGCCGGCTGCAGTCACTCATGCTCCAGCGCTCAGTTTAAGTGTAACAGCGGTCGATGTATTCCTGATTACTGGACCTGTGACGGAGACAACGACTGCGGAGACTACAGCGACGAGACCCACGCCAACTGCACCAACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097827_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
A:
PF0005713=Ldl_recept_a=PD(31.6=66.7)
C2:
PF0005713=Ldl_recept_a=PD(31.6=21.4),PF0005713=Ldl_recept_a=WD(100=69.6)
Main Inclusion Isoform:
ENSDART00000164394fB497
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCAACTGGCGCTGTGAT
R:
GTCTCCGTCACAGGTCCAGTA
Band lengths:
141-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]