MmuEX0026848 @ mm10
Exon Skipping
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:127581722-127583461:-
Coord C1 exon
chr10:127583381-127583461
Coord A exon
chr10:127582690-127582740
Coord C2 exon
chr10:127581722-127581889
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGGCGGTTTCTGTGTTTCAGAGA
3' ss Score
9.48
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
CCTACCCCACCTGCTTCCCCCTGACTCAATTTACCTGCAACAATGGCAGATGTATTAACATCAACTGGCGGTGTGACAACG
Seq A exon
AGAAGGATTGTGGGGACGGCTCTGACGAAAAGACCTGTCCTGAGCCTGCCG
Seq C2 exon
ACAATGACTGTGGGGACAACAGCGACGAAGCCGGCTGCAGTCACTCCTGCTCCAGTACCCAGTTCAAGTGCAACAGTGGCAGATGCATCCCCGAGCACTGGACGTGTGATGGGGACAATGATTGTGGGGACTACAGCGACGAGACACACGCCAACTGTACCAACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
A:
PF0005713=Ldl_recept_a=PD(34.2=72.2)
C2:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCAACAATGGCAGATGT
R:
TCTGCCACTGTTGCACTTGAA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types