RnoEX0050676 @ rn6
Exon Skipping
Gene
ENSRNOG00000025053 | Lrp1
Description
LDL receptor related protein 1 [Source:RGD Symbol;Acc:1307535]
Coordinates
chr7:70887867-70889635:-
Coord C1 exon
chr7:70889555-70889635
Coord A exon
chr7:70888865-70888915
Coord C2 exon
chr7:70887867-70888034
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGGCGGTTTCTGTGTTTCAGAGA
3' ss Score
9.48
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
CCTACCCCACCTGTTTCCCCCTGACTCAGTTTACCTGCAACAATGGCAGATGCATTAACATCAACTGGCGGTGTGACAACG
Seq A exon
AGAAGGATTGTGGGGACGGCTCTGATGAAAAGACCTGTCCTGAGCCTGCCG
Seq C2 exon
ACAATGACTGTGGAGACAATAGTGACGAAGCCGGCTGCAGTCACTCCTGCTCCAGTACCCAGTTCAAGTGCAACAGTGGCAGATGCATCCCCGAGCACTGGACTTGTGACGGGGACAACGACTGTGGAGACTACAGTGATGAGACCCATGCAAACTGTACCAACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025053_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
A:
PF0005713=Ldl_recept_a=PD(31.6=66.7)
C2:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
Main Inclusion Isoform:
ENSRNOT00000031005fB8018
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTTCCCCCTGACTCAG
R:
GGTACTGGAGCAGGAGTGACT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]