BtaEX0020540 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024632 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:56841355-56844220:+
Coord C1 exon
chr2:56841355-56841480
Coord A exon
chr2:56842205-56842342
Coord C2 exon
chr2:56844086-56844220
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTAATAACTCTATAGGTA
3' ss Score
7.98
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
ACAAATTTCTTTGCCCACCCACAAGACCTCACAGATGCAGAAATAACAGAATATGCCTGCAGCCTGAGCAAATGTGCAATGGGATCGATGACTGTGGGGACAACTCAGATGAAGATCCCTGTGGTG
Seq A exon
GTAAGCTTACATATAAAGCAAGACCTTGTAAAAAAGATGAGTTTGCTTGCAGTAATAAAAAATGTATCCCTGTGGATCTCCAGTGTGATCAACTTGATGACTGTGGAGATGGTTCAGATGAACAAGGCTGCAGAATAA
Seq C2 exon
CTCCCAGTGAGTATACCTGTGAAGATAATGTGAACCCATGTGGAGATGATGCATATTGTAATCAAATAAAAACATCTGTTTTCTGCCGCTGTAAGCCTGGATTTCAGAGAAACATGAAAAACAGACAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024632-'23-24,'23-23,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=86.0)
A:
PF0005713=Ldl_recept_a=WD(100=78.7)
C2:
PF129472=EGF_3=WD(100=69.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATTTCTTTGCCCACCCACA
R:
TCATGTTTCTCTGAAATCCAGGCT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development