HsaEX6015777 @ hg19
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:6693]
Coordinates
chr2:141113911-141116515:-
Coord C1 exon
chr2:141116390-141116515
Coord A exon
chr2:141115548-141115685
Coord C2 exon
chr2:141113911-141114045
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTATGACTCTATAGGTA
3' ss Score
9.12
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
TCAAATTTCTTTGTCCATCCACGAGACCTCACAGATGCAGAAATAACAGAATATGCCTACAGTCGGAGCAAATGTGCAATGGGATTGATGAATGCGGTGACAATTCAGATGAAGATCACTGTGGTG
Seq A exon
GTAAGCTGACATATAAAGCAAGGCCTTGTAAAAAGGATGAGTTTGCTTGTAGTAATAAAAAATGCATCCCTATGGATCTCCAGTGTGATCGACTTGATGACTGCGGAGATGGTTCAGATGAGCAAGGATGCAGAATAG
Seq C2 exon
CTCCTACTGAATATACCTGTGAAGATAATGTGAATCCATGTGGAGATGATGCATATTGTAATCAAATAAAAACATCTGTTTTCTGTCGCTGTAAGCCTGGATTTCAGAGAAACATGAAAAACAGACAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'74-75,'74-73,75-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=86.0)
A:
PF0005713=Ldl_recept_a=WD(100=78.7),PF0000822=EGF=PU(7.0=6.4)
C2:
PF0000822=EGF=PD(90.7=84.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCCATCCACGAGACCTCA
R:
TGTCTGTTTTTCATGTTTCTCTGAA
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)