MmuEX6101074 @ mm9
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:40557277-40559459:-
Coord C1 exon
chr2:40559334-40559459
Coord A exon
chr2:40558231-40558368
Coord C2 exon
chr2:40557277-40557411
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCAATGCTTCCATAGGTA
3' ss Score
9.99
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TCAAATTTCTGTGCCCACCCACGAGGCCTTACAGATGCAGAAATGATAGAATCTGCCTGCAACTTGAGAAGATATGCAACGGGATTAATGACTGTGGGGACAACTCTGATGAAGAACACTGCAGTG
Seq A exon
GTAAACTGTCATTGAAATCCAAGCCTTGTAAGAAGGATGAGTTTACTTGTAGCAACAGAAACTGCATCCCCATGGAGCTGCAATGTGATAGCCTTGATGACTGTGGTGATGGCTCTGATGAACAAGGCTGCCTGAAGA
Seq C2 exon
CTCCCATTGAACACACCTGTGAGAACAATGGGAATCCATGTGGAGATGATGCATATTGTAATCAAATCAAAACATCTGTTTTCTGTCGCTGTAAGCCAGGATTTCAGAGAAACATGAAAGGCAGAGAGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'77-87,'77-85,78-87=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=86.0)
A:
PF0005713=Ldl_recept_a=WD(100=78.7)
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAGGCCTTACAGATGCAG
R:
CTGCACACTCTCTGCCTTTCA
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: