GgaEX1033887 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31403940-31405110:-
Coord C1 exon
chr7:31404988-31405110
Coord A exon
chr7:31404591-31404728
Coord C2 exon
chr7:31403940-31404074
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACTCATTTGTAATTATGTAGATA
3' ss Score
4.8
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
TTAAGTTTCCATGCCCTCCAACAAGGCCATACAGATGTAGAAACAACAGGGTTTGTCTGAGACCTGAGCAGATTTGCAATGAGGTTGATGACTGTGGTGATAACTCGGATGAAGATCACTGTG
Seq A exon
ATAAAATCACATATAAAGCAAGACCATGTAAAAAAGATGAATTTACTTGTAATGATAAGAAATGTATTCCAATGGAGCTACAATGTGATTGGTTTGATGACTGTGGAGATGGTTCAGATGAGCAAGACTGCAAAATAA
Seq C2 exon
GTGTCACTGAGTATACATGTGAAGACAACGTGAACCCTTGTGGAGATGATGCGTACTGTAATCAAACAAAAACATCCCTACTGTGTCAGTGCAAGCCTGGATTTCAGAGAAATGAGATGAATAGACAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'93-119,'93-118,95-119
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.5)
A:
PF0005713=Ldl_recept_a=WD(100=78.7)
C2:
PF126622=cEGF=PU(82.6=41.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTTTCCATGCCCTCCAACA
R:
TCATCTCATTTCTCTGAAATCCAGGC
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]