BtaEX0020562 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98100986-98123410:+
Coord C1 exon
chr5:98100986-98101382
Coord A exon
chr5:98102439-98102610
Coord C2 exon
chr5:98123194-98123410
Length
172 bp
Sequences
Splice sites
3' ss Seq
TACTCTGTATACTTCTGTAGGTA
3' ss Score
7.78
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GTGCCACTGAATTACTGCTTCTAGCCCGAAGGACAGACTTGAGACGCATTTCTTTGGATACACCAGATTTCACTGACATTGTTCTACAGTTAGAAGACATCCGCCATGCCATTGCCATAGATTATGATCCCGTGGAAGGCTATATCTACTGGACTGATGATGAAGTGAGGGCCATACGCCGCTCCTTCATAGATGGATCTGGCAGTCAGTTTGTGGTCACTGCCCAAATTGCCCATCCTGATGGTATTGCTGTTGATTGGGTTGCCCGAAATCTTTATTGGACAGACACTGGCACTGATCGGATAGAAGTGACAAGGCTCAACGGGACCATGAGGAAGATCTTGATTTCAGAGGACTTAGAGGAACCCCGGGCTATTGTGCTAGATCCCATGGTTGG
Seq A exon
GTACATGTATTGGACTGACTGGGGAGAAATCCCGAAAATTGAGCGAGCAGCTTTGGATGGTTCTGATCGAGTAGTGTTGGTTAACACTTCTCTTGGTTGGCCAAATGGTTTAGCCTTGGATTATGATGAAGGCAAAATATACTGGGGAGATGCCAAAACAGACAAAATTGAG
Seq C2 exon
GTTATGAATACCGATGGGACTGGGAGACGAGTGCTCGTGGAAGACAAAATCCCCCACATATTTGGGTTTACCTTGTTGGGTGACTATGTCTACTGGACTGACTGGCAGAGGCGGAGCATCGAAAGAGTACACAAACGAAGCGCAGAGCGGGAAGTCATCATCGATCAGCTCCCTGACCTCATGGGCCTGAAGGCCACGAATGTTCATCGAGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(33.3=22.4)
C2:
PF0005812=Ldl_recept_b=PD(61.5=32.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGGAACCCCGGGCTATTG
R:
ACTCGATGAACATTCGTGGCC
Band lengths:
252-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development