RnoEX0050762 @ rn6
Exon Skipping
Gene
ENSRNOG00000006338 | Lrp6
Description
LDL receptor related protein 6 [Source:RGD Symbol;Acc:1304749]
Coordinates
chr4:168235774-168261508:-
Coord C1 exon
chr4:168261112-168261508
Coord A exon
chr4:168260038-168260209
Coord C2 exon
chr4:168235774-168235990
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTATGTCTTTATAGGTA
3' ss Score
11.73
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GTGCCACTGAACTATTGCTGTTAGCCCGACGGACAGACTTGAGGCGCATCTCTTTGGATACACCAGATTTCACCGACATTGTCCTACAGTTAGAAGACATCCGACATGCCATTGCCATAGACTACGACCCCGTGGAAGGCTACGTCTACTGGACGGACGATGAAGTACGGGCCATCCGTCGCTCCTTCATTGATGGATCTGGCAGTCAGTTTGTGGTCACGGCCCAGATTGCCCATCCTGATGGTATTGCTGTTGACTGGGTGGCAAGAAACCTGTACTGGACAGACACTGGCACTGATCGGATAGAAGTGACAAGGCTCAATGGGACCATGAGGAAGATCCTGATTTCAGAGGACTTAGAGGAGCCCCGGGCTATTGTGTTAGATCCCATGGCTGG
Seq A exon
GTACATGTACTGGACGGACTGGGGAGAAATCCCAAAAATCGAGCGAGCTGCTCTGGACGGATCTGACCGAGTAGTTCTTGTTAACACTTCCCTTGGTTGGCCAAATGGCTTAGCCCTGGATTATGATGAAGGCACAATATACTGGGGAGATGCCAAAACAGACAAAATTGAG
Seq C2 exon
GTTATGAATACTGATGGCACTGGGAGGCGAGTGCTGGTGGAAGACAAGATCCCTCACATATTTGGGTTTACCTTGCTGGGCGACTATGTTTACTGGACTGACTGGCAGAGGCGGAGCATCGAGAGAGTGCACAAGCGGAGTGCAGAGAGGGAGGTCATAATAGACCAGCTGCCAGACCTCATGGGACTGAAGGCCACAAGCGTTCACAGAGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006338_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(33.3=22.4)
C2:
PF0005812=Ldl_recept_b=PD(61.5=32.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTGGGTGGCAAGAAACC
R:
CCTCTGCCAGTCAGTCCAGTA
Band lengths:
256-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]