GgaEX7000699 @ galGal4
Exon Skipping
Gene
ENSGALG00000011558 | LRP6
Description
low density lipoprotein receptor-related protein 6 [Source:HGNC Symbol;Acc:HGNC:6698]
Coordinates
chr1:71865413-71878695:-
Coord C1 exon
chr1:71878293-71878695
Coord A exon
chr1:71877636-71877807
Coord C2 exon
chr1:71865413-71865629
Length
172 bp
Sequences
Splice sites
3' ss Seq
AGATTTTGTTTCCATTGCAGGTA
3' ss Score
9.68
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
ATGTAGGTGCCACTGAACTGCTGCTTCTAGCCCGCCGGACAGATTTGAGGCGCATTTCCTTAGACACTCCAGATTTTACAGACATCGTTTTGCCTCTGGAGGACATCCGTCATGCCATCGCCATTGACTTTGATCCTCTGGAAGGATACATCTATTGGACTGACGATGAAGTTAGAGCCATCCGTCGCTCATTCGTTGATGGGTCAGGTAGTCAGTTTGTTGTCACAGCACAGATTGCTCATCCTGATGGCATTGCTGTGGACTGGGTTGCCCGAAATCTGTATTGGACTGACACTGGCACAGACCGTATAGAAGTTACAAGGCTTAATGGGACCATGAGAAAAATCTTGATATCAGAAGACCTGGAAGAACCTAGAGCTATTGTGCTGGATCCTATGGTAGG
Seq A exon
GTACATGTATTGGACTGACTGGGGAGAAATTCCAAAGATCGAGAGGGCAGCATTAGATGGCTCGGACAGGATTGTGCTGGTGAATACCTCACTTGGGTGGCCAAATGGACTGGCATTGGATTATGCAGAAAGCAAAATATACTGGGGAGATGCAAAAACTGACAAAATAGAG
Seq C2 exon
GTCATGAATGCTGATGGAACTGGAAGAAGAGTTCTTGTAGAGGACAAACTTCCTCACATCTTTGGATTCACATTATTGGGAGACTATGTTTATTGGACAGATTGGCAAAGACGCAGTATTGAACGTGTGCATAAGCGGACAGCAGAAAGAGAAATCATCATAGATCAACTGCCTGATCTAATGGGCCTCAAAGCTACAAATGTACACCAGATAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011558-'13-24,'13-22,14-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=30.4),PF0005812=Ldl_recept_b=WD(100=30.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(33.3=22.4)
C2:
PF0005812=Ldl_recept_b=PD(61.5=32.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTGGACTGACACTGGCACA
R:
TGCACACGTTCAATACTGCGT
Band lengths:
254-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]