BtaEX0020873 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86193175-86194823:-
Coord C1 exon
chr10:86194692-86194823
Coord A exon
chr10:86194300-86194425
Coord C2 exon
chr10:86193175-86193318
Length
126 bp
Sequences
Splice sites
3' ss Seq
TAGCCCGCCCTGTCCCGCAGACA
3' ss Score
8
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
ACATTGACGAGTGCGAGGACCTCGGAGAACCGATATGCGGGGCCTGGAGGTGTGAGAACAGCCCTGGCTCCTACCGCTGTGTCCTGGGCTGCCAGCCTGGCTTCCACATGGCCCCGACAGGAGACTGCATTG
Seq A exon
ACATAGACGAGTGTGCCAACGACACTGTGTGTGGGAGCCATGGCTTCTGCGACAACACCGACGGCTCCTTCCGCTGCCTCTGTGACCAGGGCTTCGAGACCTCGCCCTCCGGCTGGGACTGCGTTG
Seq C2 exon
ACGTGAACGAGTGTGAGCTCATGCTGGCGGTGTGCGGGGCGGCGCTCTGCGAGAACGTGGAGGGCTCTTTCCTGTGCCTCTGCGCCAGCGACCTGGAGGAGTACGACGCTCAGGAGGGCCGCTGCCGCCCGCGAGGGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGACGAGTGCGAGGACC
R:
CTCCTGAGCGTCGTACTCCTC
Band lengths:
247-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development