MmuEX0027262 @ mm10
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:84789084-84790373:-
Coord C1 exon
chr12:84790242-84790373
Coord A exon
chr12:84789758-84789883
Coord C2 exon
chr12:84789084-84789227
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGGTCCCCATTGTCCCTCAGACA
3' ss Score
7.03
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATATTGATGAGTGTGAGGACCGTGAAGACCCGGTGTGCGGAGCCTGGAGGTGTGAGAACAGTCCTGGTTCCTACCGCTGCATCCTGGACTGCCAGCCTGGCTTCTATGTGGCGCCAAATGGAGACTGCATTG
Seq A exon
ACATAGATGAATGTGCCAATGACACTGTGTGTGGGAACCATGGCTTCTGTGACAACACGGACGGCTCCTTCCGCTGCCTGTGTGACCAGGGCTTCGAGACCTCACCATCAGGCTGGGAGTGTGTTG
Seq C2 exon
ATGTGAACGAGTGTGAGCTCATGATGGCAGTGTGTGGGGATGCGCTCTGTGAGAACGTGGAAGGCTCCTTCCTGTGCCTTTGCGCCAGTGACCTTGAGGAGTACGACGCAGAAGAAGGACACTGCCGTCCTCGGGTGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'45-45,'45-43,46-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGTGTGAGGACCGTGA
R:
GACGGCAGTGTCCTTCTTCTG
Band lengths:
257-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types